How do I download a UniProt sequence?

Retrieving sequences from the website

1. Perform your favorite query and view the resulting list of entries (e.g. this query retrieves all UniProtKB entries that are part of the human proteome: proteome:UP000005640)
2. Click the Download button in the query result page.

How do I download a PDB file?

-Under Download the Structure File, right click on the X where the PDB(top) meets with none, under compression (on left) in the table and save target as. – Type in name of Protein / Macromolecule ( examples at bottom of page). – Click on Retrieve Released Data Matching Your Query icon.

What does UniProt stand for?

The Universal Protein Resource
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).

How do I get my UniProt ID from NCBI?

You can click directly on the ‘Download’ button in the basket to retrieve the UniProt entries in your basket. To map the UniProt IDs to an external database from the basket, click on the checkboxes to the left and click on ‘Map IDs’ button in the basket, as shown in Figure 11.

How do I download a VCF file from NCBI?

VCF. NCBI SNP tracks and remotely added variation tracks can be downloaded in VCF format. To obtain VCF files of whole genome NCBI SNP annotation, please go to the NCBI SNP FTP site at ftp://ftp.ncbi.nlm.nih.gov/snp/. Please refer to this page for more information on downloading image data as PDF or SVG files.

How do I download a gene sequence from NCBI?

You can download sequence and other data from the graphical viewer by accessing the Download menu on the toolbar. You can download the FASTA formatted sequence of the visible range, all markers created on the sequence, or all selections made of the sequence.

How do I open a PDB file on my PC?

How to open a PDB file. You can use Microsoft Visual Studio (Windows) to load information from a PDB file created by that program. This allows you to debug the program the file is associated with. You can also use Microsoft’s CVDump program (Windows) to read the information a Visual Studio PDB file contains.

Where can I find PDB files?

pdb file stores all debug information for the project’s .exe file, and resides in the \debug subdirectory. The . pdb file contains full debug information, including function prototypes, not just the type information found in VC. pdb.