Who is Darryl Cooper MartyrMade?

DARRYL COOPER is a researcher, writer, and the creator of The MartyrMade Podcast. MartyrMade draws on dramatic stories from the human past in order to examine questions about conflict, ideology, religion, and identity.

What is ATAC seq footprinting?

Transposase-Accessible Chromatin followed by sequencing (ATAC-seq) is a simple protocol for detection of open chromatin. Computational footprinting, the search for regions with depletion of cleavage events due to transcription factor binding, is poorly understood for ATAC-seq.

What is motif footprinting?

A motif footprint is a plot that shows the enzyme cleavages around the motif region, presumably due to the protection of TF-bound DNA. It is typically characterized by a low-cut frequency (or low posterior probability of cut) in the motif core and a high-cut frequency in the motif flanking regions.

What is a transcription factor footprint?

Abstract. Transcription factor (TF) footprinting uncovers putative protein–DNA binding via combined analyses of chromatin accessibility patterns and their underlying TF sequence motifs.

Who does the Martyrmade podcast?

The Martyrmade Podcast Darryl Cooper. Religion, ritual, ideology, nationalism, identity… Human beings are meaning-seeking creatures, and history is the tale of the many ways our remarkable species has sought to orient itself in the world.

Where can I listen to history on fire?

History on Fire on Apple Podcasts. Where history and epic collide–“History on Fire” is a podcast by author and university professor Daniele Bolelli. For more, go to LuminaryPodcasts.com.

What is the difference between ATAC-seq and RNA Seq?

Unlike RNA sequencing, which provides information about the genes that are being expressed, ATAC-Seq (A(ssay for) T(ransposase)-A(ccessible) C(hromatin using) Seq(uencing)) provides a genome-wide view of potentially active gene switches and transcription factor-binding sites.

What is the difference between ChIP-Seq and ATAC-seq?

ATAC-seq is a high-throughput sequencing method for the study of chromatin accessibility. ChIP-Seq combines the selectivity of ChIP with the power of next-generation sequencing (NGS), providing genome-wide profiling of DNA targets for DNA-associated proteins.

What is the difference between ChIP-seq and ATAC-seq?

What is ChIP-seq data?

ChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ChIP-seq combines chromatin immunoprecipitation (ChIP) with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins.

Where can I listen to the MartyrMade podcast?

The Martyrmade Podcast | Free Listening on Podbean App.

Where did fire came from?

The oldest unequivocal evidence, found at Israel’s Qesem Cave, dates back 300,000 to 400,000 years, associating the earliest control of fire with Homo sapiens and Neanderthals. Now, however, an international team of archaeologists has unearthed what appear to be traces of campfires that flickered 1 million years ago.

How do I listen to luminary podcasts?

Where can I listen? Subscribe to the Luminary channel on Apple Podcasts.

What is ATAC-seq good for?

Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) is a method to investigate the accessibility of chromatin and thus a method to determine regulatory mechanisms of gene expression. The method can help identify promoter regions and potential enhancers and silencers.

What is the purpose of DNA footprinting?

DNA footprinting is a term that defines a collection of methods to analyze protein–DNA complexes and to identify the position of the binding site. When a protein binds to a specific site on a DNA sequence, footprinting helps to identify where the binding site is.